Publications

2024

Authored

  1. Giordano, N., Gaudin, M., Trottier, C., Delage, E., Nef, C., Bowler, C., & Chaffron, S. (2024). Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-46374-w https://doi.org/10.1038/s41467-024-46374-w
  2. Gaignard, A., Tsueng, G., Mičetić, I., Castro, L. J., & Juty, N. (2024). Improving Bioschemas creation and community adoption through process improvements, tool development, and advancing compliance to FAIR standards. https://doi.org/10.37044/osf.io/8km9j https://doi.org/10.37044/osf.io/8km9j

Acknowledged

  1. Geryk, M., Canac, R., Forest, V., Lindenbaum, P., Girardeau, A., Baudic, M., Baron, E., Bibonne, A., Chariau, C., Kyndt, F., Redon, R., Schott, J.-J., Gourraud, J.-B., Barc, J., & Charpentier, F. (2024). Generation of a patient-specific induced pluripotent stem cell line carrying the DES p.R406W mutation, an isogenic control and a DES p.R406W knock-in line. Stem Cell Research, 77, 103396. https://doi.org/10.1016/j.scr.2024.103396 https://doi.org/10.1016/j.scr.2024.103396
  2. Hulo, P., Deshayes, S., Fresquet, J., Chéné, A.-L., Blandin, S., Boisgerault, N., Fonteneau, J.-F., Treps, L., Denis, M. G., Bennouna, J., Fradin, D., Pons-Tostivint, E., & Blanquart, C. (2024). Use of non-small cell lung cancer multicellular tumor spheroids to study the impact of chemotherapy. Respiratory Research, 25(1). https://doi.org/10.1186/s12931-024-02791-5 https://doi.org/10.1186/s12931-024-02791-5
  3. Roudaut, M., Caillaud, A., Souguir, Z., Bray, L., Girardeau, A., Rimbert, A., Croyal, M., Lambert, G., Patitucci, M., Delpouve, G., Vandenhaute, É., Le May, C., Maubon, N., Cariou, B., & Si‐Tayeb, K. (2024). Human induced pluripotent stem cells‐derived liver organoids grown on a Biomimesys® hyaluronic acid‐based hydroscaffold as a new model for studying human lipoprotein metabolism. Bioengineering &Amp; Translational Medicine. Acknowledged. https://doi.org/10.1002/btm2.10659 https://doi.org/10.1002/btm2.10659
  4. Wargny, M., Goronflot, T., Rimbert, A., Boursier, J., Kab, S., Henny, J., Lainé, A., Leux, C., Smati, S., Hadjadj, S., Le May, C., Goldberg, M., Zins, M., & Cariou, B. (2024). Primary hypocholesterolemia is associated with an increased risk of hepatic complications in the general population. Journal of Hepatology. Acknowledged. https://doi.org/10.1016/j.jhep.2024.01.030 https://doi.org/10.1016/j.jhep.2024.01.030

2023

Authored

  1. Gaignard, A., Rosnet, T., de Lamotte, F., Lefort, V., & Devignes, M.-D. (2023). FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. Journal of Biomedical Semantics, 14(1), 7. https://doi.org/10.1186/s13326-023-00289-5 https://doi.org/10.1186/s13326-023-00289-5 http://hal.inria.fr/hal-04148181
  2. Dang, M.-H., Gaignard, A., Skaf-Molli, H., & Molli, P. (2023, November). Schema.org : How is it used? International Semantic Web Conference (ISWC) 2023. https://hal.science/hal-04250523 http://hal.inria.fr/hal-04250523
  3. Sebe, C., Névéol, A., Cohen-Boulakia, S., & Gaignard, A. (2023). Extraction d’informations sur les workflows scientifiques à partir de la littérature. 23ème Conférence Francophone Sur l’Extraction Et La Gestion Des Connaissances (EGC), Extraction et Gestion des Connaissances, RNTI-E-39, 313–320. https://hal.science/hal-03991363 http://hal.inria.fr/hal-03991363
  4. Djaffardjy, M., Marchment, G., Sebe, C., Blanchet, R., Belhajjame, K., Gaignard, A., Lemoine, F., & Cohen-Boulakia, S. (2023). Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems. Computational and Structural Biotechnology Journal, 21, 2075–2085. https://doi.org/https://doi.org/10.1016/j.csbj.2023.03.003 https://doi.org/https://doi.org/10.1016/j.csbj.2023.03.003

Acknowledged

  1. Durand, R., Descamps, G., Dousset, C., Bellanger, C., Maïga, S., Alberge, J.-B., Derrien, J., Cruard, J., Minvielle, S., Lilli, N. L., GODON, C. A. T. H. E. R. I. N. E., Le Bris, Y., Tessoulin, B., Amiot, M., Gomez-Bougie, P., Touzeau, C., Moreau, P., Chiron, D., Moreau-Aubry, A., & Pellat-Deceunynck, C. (2023). A p53 score derived from TP53 CRISPR/Cas9 HMCLs predicts survival and reveals major role of BAX in BH3 mimetics response. Blood Journal. Acknowledged. https://doi.org/10.1182/blood.2023021581 https://doi.org/10.1182/blood.2023021581
  2. Montassier, E., Kitsios, G. D., Radder, J. E., Le Bastard, Q., Kelly, B. J., Panzer, A., Lynch, S. V., Calfee, C. S., Dickson, R. P., & Roquilly, A. (2023). Robust airway microbiome signatures in acute respiratory failure and hospital-acquired pneumonia. Nature Medicine, 29(11), 2793–2804. https://doi.org/10.1038/s41591-023-02617-9 https://doi.org/10.1038/s41591-023-02617-9
  3. Decombis, S., Bellanger, C., Le Bris, Y., Madiot, C., Jardine, J., Santos, J. C., Boulet, D., Dousset, C., Menard, A., Kervoelen, C., Douillard, E., Moreau, P., Minvielle, S., Moreau-Aubry, A., Tessoulin, B., Roue, G., Bidère, N., Le Gouill, S., Pellat-Deceunynck, C., & Chiron, D. (2023). CARD11 gain of function upregulates BCL2A1 expression and promotes resistance to targeted therapies combination in B-cell lymphoma. Blood, 142(18), 1543–1555. https://doi.org/10.1182/blood.2023020211 https://doi.org/10.1182/blood.2023020211
  4. Dekky, B., Azar, F., Bonnier, D., Monseur, C., Kalebić, C., Arpigny, E., Colige, A., Legagneux, V., & Théret, N. (2023). ADAMTS is a stromal modulator in chronic liver disease. The FASEB Journal, 37(11). https://doi.org/10.1096/fj.202200692rrrr https://doi.org/10.1096/fj.202200692rrrr
  5. Hendrix, S., Kingma, J., Ottenhoff, R., Valiloo, M., Svecla, M., Zijlstra, L. F., Sachdev, V., Kovac, K., Levels, J. H. M., Jongejan, A., de Boer, J. F., Kuipers, F., Rimbert, A., Norata, G. D., Loregger, A., & Zelcer, N. (2023). Hepatic SREBP signaling requires SPRING to govern systemic lipid metabolism in mice and humans. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-40943-1 https://doi.org/10.1038/s41467-023-40943-1
  6. Riquin, K., Isidor, B., Mercier, S., Nizon, M., Colin, E., Bonneau, D., Pasquier, L., Odent, S., Horn, X. M. L. G., Guyader, G. L., Toutain, A., Meyer, V., Deleuze, J.-F., Pichon, O., Doco-Fenzy, M., Bézieau, S., & Cogné, B. (2023). Integrating RNA-Seq into genome sequencing workflow enhances the analysis of structural variants causing neurodevelopmental disorders. Journal of Medical Genetics, jmg–2023–109263. https://doi.org/10.1136/jmg-2023-109263 https://doi.org/10.1136/jmg-2023-109263
  7. Bessonneau-Gaborit, V., Cruard, J., Guerin-Charbonnel, C., Derrien, J., Alberge, J.-B., Douillard, E., Devic, M., Deshayes, S., Campion, L., Westermann, F., Moreau, P., Herrmann, C., Bourdon, J., Magrangeas, F., & Minvielle, S. (2023). Exploring the impact of dexamethasone on gene regulation in myeloma cells. Life Science Alliance, 6(9), e202302195. https://doi.org/10.26508/lsa.202302195 https://doi.org/10.26508/lsa.202302195
  8. Martinez, L., Pouvreau, J.-B., Jestin, C., Montiel, G., Gravot, A., Berardocco, S., Marnet, N., Bouchereau, A., Delage, E., Simier, P., & Poulin, L. (2023). Comparative analysis of two neighboring conducive and suppressive soils towards plant parasitism caused by Phelipanche ramosa L. Pomel on Brassica napus L. Acknowledged. https://doi.org/10.21203/rs.3.rs-3059250/v1 https://doi.org/10.21203/rs.3.rs-3059250/v1
  9. Defois, A., Bon, N., Charpentier, A., Georget, M., Gaigeard, N., Blanchard, F., Hamel, A., Waast, D., Armengaud, J., Renoult, O., Pecqueur, C., Maugars, Y., Boutet, M.-A., Guicheux, J., & Vinatier, C. (2023). Osteoarthritic chondrocytes undergo a glycolysis-related metabolic switch upon exposure to IL-1b or TNF. Cell Communication and Signaling, 21(1). https://doi.org/10.1186/s12964-023-01150-z https://doi.org/10.1186/s12964-023-01150-z
  10. Vanhoye, X., Bardel, C., Rimbert, A., Moulin, P., Rollat-Farnier, P.-A., Muntaner, M., Marmontel, O., Dumont, S., Charrière, S., Cornélis, F., Ducluzeau, P. H., Fonteille, A., Nobecourt, E., Peretti, N., Schillo, F., Wargny, M., Cariou, B., Meirhaeghe, A., & Filippo, M. D. (2023). A new 165-SNP low-density lipoprotein cholesterol polygenic risk score based on next generation sequencing outperforms previously published scores in routine diagnostics of familial hypercholesterolemia. Translational Research, 255, 119–127. https://doi.org/10.1016/j.trsl.2022.12.002 https://doi.org/10.1016/j.trsl.2022.12.002
  11. Wu, Y., Chaumier, T., Manirakiza, E., Veluchamy, A., & Tirichine, L. (2023). PhaeoEpiView: an epigenome browser of the newly assembled genome of the model diatom Phaeodactylum tricornutum. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-35403-1 https://doi.org/10.1038/s41598-023-35403-1
  12. Vanhoye, X., Bardel, C., Rimbert, A., Moulin, P., Rollat-Farnier, P.-A., Muntaner, M., Marmontel, O., Dumont, S., Charrière, S., Cornélis, F., Ducluzeau, P. H., Fonteille, A., Nobecourt, E., Peretti, N., Schillo, F., Wargny, M., Cariou, B., Meirhaeghe, A., & Filippo, M. D. (2023). A new 165-SNP low-density lipoprotein cholesterol polygenic risk score based on next generation sequencing outperforms previously published scores in routine diagnostics of familial hypercholesterolemia. Translational Research, 255, 119–127. https://doi.org/10.1016/j.trsl.2022.12.002 https://doi.org/10.1016/j.trsl.2022.12.002
  13. Maaziz, N., Garrec, C., Airaud, F., Bobée, V., Contentin, N., Cayssials, E., Rimbert, A., Aral, B., Bézieau, S., Gardie, B., & Girodon, F. (2023). Germline JAK2 E846D Substitution as the Cause of Erythrocytosis? Genes, 14(5), 1066. https://doi.org/10.3390/genes14051066 https://doi.org/10.3390/genes14051066
  14. Myasoedova, V. A., Rimbert, A., Camera, M., May, C. L., Capoulade, R., Cariou, B., & Poggio, P. (2023). LDL lowering effect of PCSK9 inhibition is reduced in women. European Heart Journal - Cardiovascular Pharmacotherapy, 9(4), 337–342. https://doi.org/10.1093/ehjcvp/pvad009 https://doi.org/10.1093/ehjcvp/pvad009
  15. Fizanne, L., Villard, A., Benabbou, N., Recoquillon, S., Soleti, R., Delage, E., Wertheimer, M., Vidal-Gómez, X., Oullier, T., Chaffron, S., Martı́nez M. Carmen, Neunlist, M., Boursier, J., & Andriantsitohaina, R. (2023). Faeces-derived extracellular vesicles participate in the onset of barrier dysfunction leading to liver diseases. Journal of Extracellular Vesicles, 12(2). https://doi.org/10.1002/jev2.12303 https://doi.org/10.1002/jev2.12303
  16. Lê, A., Selle, A., Aubert, P., Durand, T., Brosseau, C., Bordron, P., Delage, E., Chaffron, S., Petitfils, C., Cenac, N., Neunlist, M., Bodinier, M., & Rolli-Derkinderen, M. (2023). Maternal prebiotic supplementation impacts colitis development in offspring mice. Frontiers in Nutrition, 9. https://doi.org/10.3389/fnut.2022.988529 https://doi.org/10.3389/fnut.2022.988529
  17. Nguyen, N.-K., Devilder, M.-C., Gautreau-Rolland, L., Fourgeux, C., Sinha, D., Poschmann, J., Hourmant, M., Bressollette-Bodin, C., Saulquin, X., & McIlroy, D. (2023). A cluster of broadly neutralizing IgG against BK polyomavirus in a repertoire dominated by IgM. Life Science Alliance, 6(4), e202201567. https://doi.org/10.26508/lsa.202201567 https://doi.org/10.26508/lsa.202201567
  18. Dijoux, E., Klein, M., Misme-Aucouturier, B., Cheminant, M.-A., de Carvalho, M., Collin, L., Hassoun, D., Delage, E., Gourdel, M., Loirand, G., Sauzeau, V., Magnan, A., & Bouchaud, G. (2023). Allergic Sensitization Driving Immune Phenotyping and Disease Severity in a Mouse Model of Asthma. Allergy, Asthma &Amp\Mathsemicolon Immunology Research, 15(2), 246. https://doi.org/10.4168/aair.2023.15.2.246 https://doi.org/10.4168/aair.2023.15.2.246
  19. Bolteau, M., Bourdon, J., David, L., & Guziolowski, C. (2023). Inferring Boolean Networks from Single-Cell Human Embryo Datasets. In Lecture Notes in Computer Science (pp. 431–441). Springer Nature Singapore. https://doi.org/10.1007/978-981-99-7074-2_34 https://doi.org/10.1007/978-981-99-7074-2_34
  20. Bolteau, M., Bourdon, J., David, L., & Guziolowski, C. (2023). Inferring Boolean Networks from Single-Cell Human Embryo Datasets. In Lecture Notes in Computer Science (pp. 431–441). Springer Nature Singapore. https://doi.org/10.1007/978-981-99-7074-2_34 https://doi.org/10.1007/978-981-99-7074-2_34
  21. Bolteau, M., Bourdon, J., David, L., & Guziolowski, C. (2023). Inferring Boolean Networks from Single-Cell Human Embryo Datasets. In Lecture Notes in Computer Science (pp. 431–441). Springer Nature Singapore. https://doi.org/10.1007/978-981-99-7074-2_34 https://doi.org/10.1007/978-981-99-7074-2_34

2022

Authored

  1. Jotereau, F., Alameddine, J., Teusan, R., Pédron, A., Jouand, N., Altare, F., & Godefroy, E. (2022). Human gut microbiota-reactive DP8\upalpha regulatory T cells, signature and related emerging functions. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.1026994 https://doi.org/10.3389/fimmu.2022.1026994
  2. Churcheward, B., Millet, M., Bihouée, A., Fertin, G., & Chaffron, S. (2022). MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics. MSystems, 7(4). https://doi.org/10.1128/msystems.00432-22 https://doi.org/10.1128/msystems.00432-22
  3. Dominguez-Huerta, G., Zayed, A. A., Wainaina, J. M., Guo, J., Tian, F., Pratama, A. A., Bolduc, B., Mohssen, M., Zablocki, O., Pelletier, E., Delage, E., Alberti, A., Aury, J.-M., Carradec, Q., da Silva, C., Labadie, K., Poulain, J., Bowler, C., Eveillard, D., … and, M. B. S. (2022). Diversity and ecological footprint of Global Ocean RNA viruses. Science, 376(6598), 1202–1208. https://doi.org/10.1126/science.abn6358 https://doi.org/10.1126/science.abn6358
  4. Zayed, A. A., Wainaina, J. M., Dominguez-Huerta, G., Pelletier, E., Guo, J., Mohssen, M., Tian, F., Pratama, A. A., Bolduc, B., Zablocki, O., Cronin, D., Solden, L., Delage, E., Alberti, A., Aury, J.-M., Carradec, Q., da Silva, C., Labadie, K., Poulain, J., … and, P. W. (2022). Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome. Science, 376(6589), 156–162. https://doi.org/10.1126/science.abm5847 https://doi.org/10.1126/science.abm5847
  5. Misme-Aucouturier, B., Carvalho, M. D., Delage, E., Dijoux, E., Klein, M., Brosseau, C., Bodinier, M., Guzylack-Piriou, L., & Bouchaud, G. (2022). Oral exposure to bisphenol A exacerbates allergic inflammation in a mouse model of food allergy. Toxicology, 472, 153188. https://doi.org/10.1016/j.tox.2022.153188 https://doi.org/10.1016/j.tox.2022.153188
  6. Barc, J., Tadros, R., Glinge, C., Chiang, D. Y., Jouni, M., Simonet, F., Jurgens, S. J., Baudic, M., Nicastro, M., Potet, F., Offerhaus, J. A., Walsh, R., Choi, S. H., Verkerk, A. O., Mizusawa, Y., Anys, S., Minois, D., Arnaud, M., Duchateau, J., … and. (2022). Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility. Nature Genetics, 54(3), 232–239. https://doi.org/10.1038/s41588-021-01007-6 https://doi.org/10.1038/s41588-021-01007-6
  7. Alves, I., Giemza, J., Blum, M., Bernhardsson, C., Chatel, S., Karakachoff, M., Pierre, A. S., Herzig, A. F., Olaso, R., Monteil, M., Gallien, V., Cabot, E., Svensson, E., Bacq-Daian, D., Baron, E., Berthelier, C., Besse, C., Blanché, H., Bocher, O., … Dina, C. (2022). Genetic population structure across Brittany and the downstream Loire basin provides new insights on the demographic history of Western Europe. https://doi.org/10.1101/2022.02.03.478491 https://doi.org/10.1101/2022.02.03.478491
  8. Lamothe, L., Gaignard, A., Kierkegaard, M., Hager Eldakroury, Black, M., Brancotte, B., Ison, J., Schwämmle, V., Kalaš, M., & Ménager, H. (2022). EDAM, life sciences ontology for data analysis and management. https://doi.org/10.5281/ZENODO.6769072 https://doi.org/10.5281/ZENODO.6769072
  9. Garzón, W., Benavides, L., Gaignard, A., Redon, R., & Südholt, M. (2022). A taxonomy of tools and approaches for distributed genomic analyses. Informatics in Medicine Unlocked, 32, 101024. https://doi.org/10.1016/j.imu.2022.101024 https://doi.org/10.1016/j.imu.2022.101024

Acknowledged

  1. Canac, R., Cimarosti, B., Girardeau, A., Forest, V., Olchesqui, P., Poschmann, J., Redon, R., Lemarchand, P., Gaborit, N., & Lamirault, G. (2022). Deciphering Transcriptional Networks during Human Cardiac Development. Cells, 11(23), 3915. https://doi.org/10.3390/cells11233915 https://doi.org/10.3390/cells11233915
  2. Flippe, L., Gaignerie, A., Sérazin, C., Baron, O., Saulquin, X., Anegon, I., David, L., & Guillonneau, C. (2022). Generation of CD34\mathplusCD43\mathplus Hematopoietic Progenitors to Induce Thymocytes from Human Pluripotent Stem Cells. Cells, 11(24), 4046. https://doi.org/10.3390/cells11244046 https://doi.org/10.3390/cells11244046
  3. Canac, R., Cimarosti, B., Girardeau, A., Forest, V., Olchesqui, P., Poschmann, J., Redon, R., Lemarchand, P., Gaborit, N., & Lamirault, G. (2022). Deciphering Transcriptional Networks during Human Cardiac Development. Cells, 11(23), 3915. https://doi.org/10.3390/cells11233915 https://doi.org/10.3390/cells11233915
  4. Martinez, L., Pouvreau, J.-B., Montiel, G., Jestin, C., Delavault, P., Simier, P., & Poulin, L. (2022). Soil microbiota promotes early developmental stages of Phelipanche ramosa L. Pomel during plant parasitism on Brassica napus L. Plant and Soil, 483(1-2), 667–691. https://doi.org/10.1007/s11104-022-05822-6 https://doi.org/10.1007/s11104-022-05822-6
  5. Drouin, M., Saenz, J., Gauttier, V., Evrard, B., Teppaz, G., Pengam, S., Mary, C., Desselle, A., Thepenier, V., Wilhelm, E., Merieau, E., Ligeron, C., Girault, I., Lopez, M.-D., Fourgeux, C., Sinha, D., Baccelli, I., Moreau, A., Louvet, C., … Chiffoleau, E. (2022). CLEC-1 is a death sensor that limits antigen cross-presentation by dendritic cells and represents a target for cancer immunotherapy. Science Advances, 8(46). https://doi.org/10.1126/sciadv.abo7621 https://doi.org/10.1126/sciadv.abo7621
  6. André-Grégoire, G., Maghe, C., Douanne, T., Rosińska, S., Spinelli, F., Thys, A., Trillet, K., Jacobs, K. A., Ballu, C., Dupont, A., Lyne, A.-M., Cavalli, F. M. G., Busnelli, I., Hyenne, V., Goetz, J. G., Bidère, N., & Gavard, J. (2022). Inhibition of the pseudokinase MLKL alters extracellular vesicle release and reduces tumor growth in glioblastoma. IScience, 25(10), 105118. https://doi.org/10.1016/j.isci.2022.105118 https://doi.org/10.1016/j.isci.2022.105118
  7. Picault, S., Ezanno, P., Smith, K., Amrine, D., White, B., & Assié, S. (2022). Modelling the effects of antimicrobial metaphylaxis and pen size on bovine respiratory disease in high and low risk fattening cattle. Veterinary Research, 53(1). https://doi.org/10.1186/s13567-022-01094-1 https://doi.org/10.1186/s13567-022-01094-1
  8. Bonneaud, T. L., Lefebvre, C. C., Nocquet, L., Basseville, A., Roul, J., Weber, H., Campone, M., Juin, P. P., & Souazé, F. (2022). Targeting of MCL-1 in breast cancer-associated fibroblasts reverses their myofibroblastic phenotype and pro-invasive properties. Cell Death &Amp\Mathsemicolon Disease, 13(9). https://doi.org/10.1038/s41419-022-05214-9 https://doi.org/10.1038/s41419-022-05214-9
  9. McIlroy, D., Peltier, C., Nguyen, M.-L., Manceau, L., Mobuchon, L., Baut, N. L., Nguyen, N.-K., Tran, M.-C., Nguyen, T.-C., & Bressollette-Bodin, C. (2022). Quantification of APOBEC3 Mutation Rates Affecting the VP1 Gene of BK Polyomavirus In Vivo. Viruses, 14(9), 2077. https://doi.org/10.3390/v14092077 https://doi.org/10.3390/v14092077
  10. Ezanno, P., Picault, S., Bareille, S., Beaunée, G., Boender, G. J., Dankwa, E. A., Deslandes, F., Donnelly, C. A., Hagenaars, T. J., Hayes, S., Jori, F., Lambert, S., Mancini, M., Munoz, F., Pleydell, D. R. J., Thompson, R. N., Vergu, E., Vignes, M., & Vergne, T. (2022). The African swine fever modelling challenge: Model comparison and lessons learnt. Epidemics, 40, 100615. https://doi.org/10.1016/j.epidem.2022.100615 https://doi.org/10.1016/j.epidem.2022.100615
  11. Batta, S. P. R., Rio, M., Lebot, C., Baron-Menguy, C., Ruz, R. L., Loirand, G., & Vion, A.-C. (2022). ARHGEF18 participates in Endothelial Cell Mechano-sensitivity in Response to Flow. Acknowledged. https://doi.org/10.1101/2022.09.10.507283 https://doi.org/10.1101/2022.09.10.507283
  12. Morel, S., Hostettler, I. C., Spinner, G. R., Bourcier, R., Pera, J., Meling, T. R., Alg, V. S., Houlden, H., Bakker, M. K., van’t Hof, F., Rinkel, G. J. E., Foroud, T., Lai, D., Moomaw, C. J., Worrall, B. B., Caroff, J., Constant-dits-Beaufils, P., Karakachoff, M., Rimbert, A., … and. (2022). Intracranial Aneurysm Classifier Using Phenotypic Factors: An International Pooled Analysis. Journal of Personalized Medicine, 12(9), 1410. https://doi.org/10.3390/jpm12091410 https://doi.org/10.3390/jpm12091410
  13. Delwarde, C., Toquet, C., Aumond, P., Kayvanjoo, A. H., Foucal, A., Vely, B. L., Baudic, M., Lauzier, B., Blandin, S., Véziers, J., Paul-Gilloteaux, P., Lecointe, S., Baron, E., Massaiu, I., Poggio, P., Rémy, S., Anegon, I., Marec, H. L., Monassier, L., … Capoulade, R. (2022). Multimodality imaging and transcriptomics to phenotype mitral valve dystrophy in a unique knock-in Filamin-A rat model. Cardiovascular Research, 119(3), 759–771. https://doi.org/10.1093/cvr/cvac136 https://doi.org/10.1093/cvr/cvac136
  14. Chaumette, T., Cinotti, R., Mollé, A., Solomon, P., Castain, L., Fourgeux, C., McWilliam, H. E. G., Misme-Aucouturier, B., Broquet, A., Jacqueline, C., Vourc’h, M., Fradin, D., Bossard, C., David, L., Montassier, E., Braudeau, C., Josien, R., Villadangos, J. A., Asehnoune, K., … Roquilly, A. (2022). Monocyte Signature Associated with Herpes Simplex Virus Reactivation and Neurological Recovery after Brain Injury. American Journal of Respiratory and Critical Care Medicine, 206(3), 295–310. https://doi.org/10.1164/rccm.202110-2324oc https://doi.org/10.1164/rccm.202110-2324oc
  15. Autin, P., Deshayes, S., Lea, J., Boisgerault, N., Dupré, E., Labarrière, N., Leguevel, R., Fonteneau, J.-F., Blanquart, C., & Fradin, D. (2022). The DCMU Herbicide Shapes T-cell Functions By Modulating Micro-RNA Expression Profiles. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.925241 https://doi.org/10.3389/fimmu.2022.925241
  16. Goudal, A., Karakachoff, M., Lindenbaum, P., Baron, E., Bonnaud, S., Kyndt, F., Arnaud, M., Minois, D., Bourcereau, E., Thollet, A., Deleuze, J.-F., Genin, E., Wiart, F., Pasquié, J.-L., Galand, V., Sacher, F., Dina, C., Redon, R., Bezieau, S., … Barc, J. (2022). Burden of rare variants in arrhythmogenic cardiomyopathy with right dominant form-associated genes provides new insights for molecular diagnosis and clinical management. Human Mutation, 43(9), 1333–1342. https://doi.org/10.1002/humu.24436 https://doi.org/10.1002/humu.24436
  17. Dupas, T., Persello, A., Blangy-Letheule, A., Denis, M., Erraud, A., Aillerie, V., Leroux, A. A., Rivière, M., Lebreton, J., Tessier, A., Rozec, B., & Lauzier, B. (2022). Beneficial Effects of O-GlcNAc Stimulation in a Young Rat Model of Sepsis: Beyond Modulation of Gene Expression. International Journal of Molecular Sciences, 23(12), 6430. https://doi.org/10.3390/ijms23126430 https://doi.org/10.3390/ijms23126430
  18. Herzig, A. F., Ciullo, M., Deleuze, J.-F., Génin, E., Redon, R., Adjou, C., Chatel, S., Férec, C., Goldberg, M., Halbout, P.-A., Marec, H. L., L’Helgouach, D., Rouault, K., Schott, J.-J., Vogelsperger, A., Zins, M., Bacq, D., Blanchet, H., Boland, A., … and, H. P. (2022). Moment estimators of relatedness from low-depth whole-genome sequencing data. BMC Bioinformatics, 23(1). https://doi.org/10.1186/s12859-022-04795-8 https://doi.org/10.1186/s12859-022-04795-8
  19. Basseville, A., Violet, P.-C., Safari, M., Sourbier, C., Linehan, W. M., Robey, R. W., Levine, M., Sackett, D. L., & Bates, S. E. (2022). A Histone Deacetylase Inhibitor Induces Acetyl-CoA Depletion Leading to Lethal Metabolic Stress in RAS-Pathway Activated Cells. Cancers, 14(11), 2643. https://doi.org/10.3390/cancers14112643 https://doi.org/10.3390/cancers14112643
  20. Régimbeau, A., Budinich, M., Larhlimi, A., Karlusich, J. J. P., Aumont, O., Memery, L., Bowler, C., & Eveillard, D. (2022). Contribution of genome-scale metabolic modelling to niche theory. Ecology Letters, 25(6), 1352–1364. https://doi.org/10.1111/ele.13954 https://doi.org/10.1111/ele.13954
  21. Cimarosti, B., Canac, R., Waard, S. D., Girardeau, A., Gaignerie, A., Derevier, A., Forest, V., Ronjat, M., Marec, H. L., Gourraud, J.-B., Lemarchand, P., Waard, M. D., Lamirault, G., & Gaborit, N. (2022). Generation of human induced pluripotent stem cell lines from three patients affected by Catecholaminergic Polymorphic ventricular tachycardia (CPVT) carrying heterozygous mutations in RYR2 gene. Stem Cell Research, 60, 102688. https://doi.org/10.1016/j.scr.2022.102688 https://doi.org/10.1016/j.scr.2022.102688
  22. Tran, N. T., Lecomte, E., Saleun, S., Namkung, S., Robin, C., Weber, K., Devine, E., Blouin, V., Adjali, O., Ayuso, E., Gao, G., Penaud-Budloo, M., & Tai, P. W. L. (2022). Human and Insect Cell-Produced Recombinant Adeno-Associated Viruses Show Differences in Genome Heterogeneity. Human Gene Therapy, 33(7-8), 371–388. https://doi.org/10.1089/hum.2022.050 https://doi.org/10.1089/hum.2022.050
  23. Girardeau, A., Atticus, D., Canac, R., Cimarosti, B., Caillaud, A., Chariau, C., Simonet, F., Cariou, B., Charpentier, F., Gourraud, J.-B., Probst, V., Belbachir, N., Jesel, L., Lemarchand, P., Barc, J., Redon, R., Gaborit, N., & Lamirault, G. (2022). Generation of human induced pluripotent stem cell lines from four unrelated healthy control donors carrying European genetic background. Stem Cell Research, 59, 102647. https://doi.org/10.1016/j.scr.2021.102647 https://doi.org/10.1016/j.scr.2021.102647
  24. Küry, S., Ebstein, F., Mollé, A., Besnard, T., Lee, M.-K., Vignard, V., Hery, T., Nizon, M., Mancini, G. M. S., Giltay, J. C., Cogné, B., McWalter, K., Deb, W., Mor-Shaked, H., Li, H., Schnur, R. E., Wentzensen, I. M., Denommé-Pichon, A.-S., Fourgeux, C., … Isidor, B. (2022). Rare germline heterozygous missense variants in BRCA1-associated protein 1, BAP1, cause a syndromic neurodevelopmental disorder. The American Journal of Human Genetics, 109(2), 361–372. https://doi.org/10.1016/j.ajhg.2021.12.011 https://doi.org/10.1016/j.ajhg.2021.12.011
  25. Alberge, J.-B., Kraeber-Bodéré, F., Jamet, B., Touzeau, C., Caillon, H., Wuilleme, S., Béné, M.-C., Kampfenkel, T., Sonneveld, P., van Duin, M., Avet-Loiseau, H., Corre, J., Magrangeas, F., Carlier, T., Bodet-Milin, C., Chérel, M., Moreau, P., Minvielle, S., & Bailly, C. (2022). Molecular Signature of \lesssup\greater18\less/sup\greaterF-FDG PET Biomarkers in Newly Diagnosed Multiple Myeloma Patients: A Genome-Wide Transcriptome Analysis from the CASSIOPET Study. Journal of Nuclear Medicine, 63(7), 1008–1013. https://doi.org/10.2967/jnumed.121.262884 https://doi.org/10.2967/jnumed.121.262884
  26. Combot, Y., Salo, V. T., Chadeuf, G., Hölttä, M., Ven, K., Pulli, I., Ducheix, S., Pecqueur, C., Renoult, O., Lak, B., Li, S., Karhinen, L., Belevich, I., May, C. L., Rieusset, J., Lay, S. L., Croyal, M., Tayeb, K. S., Vihinen, H., … Prieur, X. (2022). Seipin localizes at endoplasmic-reticulum-mitochondria contact sites to control mitochondrial calcium import and metabolism in adipocytes. Cell Reports, 38(2), 110213. https://doi.org/10.1016/j.celrep.2021.110213 https://doi.org/10.1016/j.celrep.2021.110213

2021

Authored

  1. Meistermann, D., Bruneau, A., Loubersac, S., Reignier, A., Firmin, J., François-Campion, V., Kilens, S., Lelièvre, Y., Lammers, J., Feyeux, M., Hulin, P., Nedellec, S., Bretin, B., Castel, G., Allègre, N., Covin, S., Bihouée, A., Soumillon, M., Mikkelsen, T., … David, L. (2021). Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification. Cell Stem Cell, 28(9), 1625–1640.e6. https://doi.org/10.1016/j.stem.2021.04.027 https://doi.org/10.1016/j.stem.2021.04.027
  2. Deutschmann, I. M., Krabberød, A. K., Latorre, F., Delage, E., Marrasé, C., Balagué, V., Gasol, J. M., Massana, R., Eveillard, D., Chaffron, S., & Logares, R. (2021). Disentangling temporal associations in marine microbial networks. https://doi.org/10.1101/2021.07.13.452187 https://doi.org/10.1101/2021.07.13.452187
  3. Sayed, Z. R. A., Jouni, M., Gourraud, J.-B., Belbachir, N., Barc, J., Girardeau, A., Forest, V., Derevier, A., Gaignerie, A., Chariau, C., Cimarosti, B., Canac, R., Olchesqui, P., Charpentier, E., Schott, J.-J., Redon, R., Baró, I., Probst, V., Charpentier, F., … Gaborit, N. (2021). A consistent arrhythmogenic trait in Brugada syndrome cellular phenotype. Clinical and Translational Medicine, 11(6). https://doi.org/10.1002/ctm2.413 https://doi.org/10.1002/ctm2.413
  4. Zoppi, J., Guillaume, J.-F., Neunlist, M., & Chaffron, S. (2021). MiBiOmics: an interactive web application for multi-omics data exploration and integration. BMC Bioinformatics, 22(1). https://doi.org/10.1186/s12859-020-03921-8 https://doi.org/10.1186/s12859-020-03921-8
  5. Ison, J., Ienasescu, H., Rydza, E., Chmura, P., Rapacki, K., Gaignard, A., Schwämmle, V., van Helden, J., Kalaš, M., & Ménager, H. (2021). biotoolsSchema: a formalized schema for bioinformatics software description. GigaScience, 10(1). https://doi.org/10.1093/gigascience/giaa157 https://doi.org/10.1093/gigascience/giaa157
  6. Lefebvre, M., Gaignard, A., Folschette, M., Bourdon, J., & Guziolowski, C. (2021). Large-scale regulatory and signaling network assembly through linked open data. Database, 2021. https://doi.org/10.1093/database/baaa113 https://doi.org/10.1093/database/baaa113
  7. Charpentier, E., Cornec, M., Dumont, S., Meistermann, D., Bordron, P., David, L., Redon, R., Bonnaud, S., & Bihouée, A. (2021). 3’ RNA sequencing for robust and low-cost gene expression profiling. https://doi.org/10.21203/rs.3.pex-1336/v1 https://doi.org/10.21203/rs.3.pex-1336/v1

Acknowledged

  1. Roudaut, M., Idriss, S., Caillaud, A., Girardeau, A., Rimbert, A., Champon, B., David, A., Lévêque, A., Arnaud, L., Pichelin, M., Prieur, X., Prat, A., Seidah, N. G., Zibara, K., May, C. L., Cariou, B., & Si-Tayeb, K. (2021). PCSK9 regulates the NODAL signaling pathway and cellular proliferation in hiPSCs. Stem Cell Reports, 16(12), 2958–2972. https://doi.org/10.1016/j.stemcr.2021.10.004 https://doi.org/10.1016/j.stemcr.2021.10.004
  2. Danger, R., Moiteaux, Q., Feseha, Y., Geffard, E., Ramstein, G., & Brouard, S. (2021). FaDA: A web application for regular laboratory data analyses. PLOS ONE, 16(12), e0261083. https://doi.org/10.1371/journal.pone.0261083 https://doi.org/10.1371/journal.pone.0261083
  3. Rose, S., Cuvellier, M., Ezan, F., Carteret, J., Bruyère, A., Legagneux, V., Nesslany, F., Baffet, G., & Langouët, S. (2021). DMSO-free highly differentiated HepaRG spheroids for chronic toxicity, liver functions and genotoxicity studies. Archives of Toxicology, 96(1), 243–258. https://doi.org/10.1007/s00204-021-03178-x https://doi.org/10.1007/s00204-021-03178-x
  4. Chaffron, S., Delage, E., Budinich, M., Vintache, D., Henry, N., Nef, C., Ardyna, M., Zayed, A. A., Junger, P. C., Galand, P. E., Lovejoy, C., Murray, A. E., Sarmento, H., Acinas, S. G., Babin, M., Iudicone, D., Jaillon, O., Karsenti, E., Wincker, P., … and, D. E. (2021). Environmental vulnerability of the global ocean epipelagic plankton community interactome. Science Advances, 7(35). https://doi.org/10.1126/sciadv.abg1921 https://doi.org/10.1126/sciadv.abg1921
  5. Gonzales, J., Marchix, J., Aymeric, L., Berre-Scoul, C. L., Zoppi, J., Bordron, P., Burel, M., Davidovic, L., Richard, J.-R., Gaman, A., Lejuste, F., Brouillet, J. Z., Vacon, F. L., Chaffron, S., Leboyer, M., Boudin, H., & Neunlist, M. (2021). Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System. Microorganisms, 9(8), 1723. https://doi.org/10.3390/microorganisms9081723 https://doi.org/10.3390/microorganisms9081723
  6. Montassier, E., Valdés-Mas, R., Batard, E., Zmora, N., Dori-Bachash, M., Suez, J., & Elinav, E. (2021). Probiotics impact the antibiotic resistance gene reservoir along the human GI tract in a person-specific and antibiotic-dependent manner. Nature Microbiology, 6(8), 1043–1054. https://doi.org/10.1038/s41564-021-00920-0 https://doi.org/10.1038/s41564-021-00920-0
  7. Mutala, L. B., Deleine, C., Karakachoff, M., Dansette, D., Ducoin, K., Oger, R., Rousseau, O., Podevin, J., Duchalais, E., Fourquier, P., Thomas, W. E. A., Gourraud, P.-A., Bennouna, J., Brochier, C., Gervois, N., Bossard, C., & Jarry, A. (2021). The Caspase-1/IL-18 Axis of the Inflammasome in Tumor Cells: A Modulator of the Th1/Tc1 Response of Tumor-Infiltrating T Lymphocytes in Colorectal Cancer. Cancers, 13(2), 189. https://doi.org/10.3390/cancers13020189 https://doi.org/10.3390/cancers13020189
  8. Moreau, F., Thédrez, A., Garçon, D., Ayer, A., Sotin, T., Dijk, W., Blanchard, C., Chadeuf, G., Arnaud, L., Croyal, M., Landeghem, L. V., Touvron, M., Prieur, X., Roubtsova, A., Seidah, N., Prat, A., Cariou, B., & May, C. L. (2021). PCSK9 is not secreted from mature differentiated intestinal cells. Journal of Lipid Research, 62, 100096. https://doi.org/10.1016/j.jlr.2021.100096 https://doi.org/10.1016/j.jlr.2021.100096

2020

Authored

  1. Castel, G., Meistermann, D., Bretin, B., Firmin, J., Blin, J., Loubersac, S., Bruneau, A., Chevolleau, S., Kilens, S., Chariau, C., Gaignerie, A., Francheteau, Q., Kagawa, H., Charpentier, E., Flippe, L., François–Campion, V., Haider, S., Dietrich, B., Knöfler, M., … David, L. (2020). Induction of Human Trophoblast Stem Cells from Somatic Cells and Pluripotent Stem Cells. Cell Reports, 33(8), 108419. https://doi.org/10.1016/j.celrep.2020.108419 https://doi.org/10.1016/j.celrep.2020.108419
  2. Rousseau, O., Karakachoff, M., Gaignard, A., Bellanger, L., Bijlenga, P., Beaufils, P. C. D., L’Allinec, V., Levrier, O., Aguettaz, P., Desilles, J.-P., Michelozzi, C., Marnat, G., Vion, A.-C., Loirand, G., Desal, H., Redon, R., Gourraud, P.-A., & Bourcier, R. (2020). Location of intracranial aneurysms is the main factor associated with rupture in the ICAN population. Journal of Neurology, Neurosurgery &Amp\Mathsemicolon Psychiatry, 92(2), 122–128. https://doi.org/10.1136/jnnp-2020-324371 https://doi.org/10.1136/jnnp-2020-324371
  3. Nouri, A., Autrusseau, F., Bourcier, R., Gaignard, A., L’allinec, V., Menguy, C., Véziers, J., Desal, H., Loirand, G., & Redon, R. (2020). Characterization of 3D bifurcations in micro-scan and MRA-TOF images of cerebral vasculature for prediction of intra-cranial aneurysms. Computerized Medical Imaging and Graphics, 84, 101751. https://doi.org/10.1016/j.compmedimag.2020.101751 https://doi.org/10.1016/j.compmedimag.2020.101751
  4. Patin, J., Castro, C., Steenman, M., Hivonnait, A., Carcouët, A., Tessier, A., Lebreton, J., Bihouée, A., Donnart, A., Marec, H. L., Baró, I., Charpentier, F., & Derangeon, M. (2020). Gap-134, a Connexin43 activator, prevents age-related development of ventricular fibrosis in Scn5a- mice. Pharmacological Research, 159, 104922. https://doi.org/10.1016/j.phrs.2020.104922 https://doi.org/10.1016/j.phrs.2020.104922
  5. Gaignard, A., Skaf-Molli, H., & Belhajjame, K. (2020). Findable and reusable workflow data products: A genomic workflow case study. Semantic Web, 11(5), 751–763. https://doi.org/10.3233/sw-200374 https://doi.org/10.3233/sw-200374
  6. Huet, S., Pouvreau, J.-B., Delage, E., Delgrange, S., Marais, C., Bahut, M., Delavault, P., Simier, P., & Poulin, L. (2020). Populations of the Parasitic Plant Phelipanche ramosa Influence Their Seed Microbiota. Frontiers in Plant Science, 11. https://doi.org/10.3389/fpls.2020.01075 https://doi.org/10.3389/fpls.2020.01075
  7. L’Allinec, V., Chatel, S., Karakachoff, M., Bourcereau, E., Lamoureux, Z., Gaignard, A., Autrusseau, F., Jouan, S., Vion, A.-C., Loirand, G., Desal, H., Naggara, O., Redon, R., Edjlali, M., & and, R. B. (2020). Prediction of Unruptured Intracranial Aneurysm Evolution: The UCAN Project. Neurosurgery, 87(1), 150–156. https://doi.org/10.1093/neuros/nyaa093 https://doi.org/10.1093/neuros/nyaa093
  8. Chénais Benoı̂t, Cornec, M., Dumont, S., Marchand, J., & Blanckaert, V. (2020). Transcriptomic Response of Breast Cancer Cells MDA-MB-231 to Docosahexaenoic Acid: Downregulation of Lipid and Cholesterol Metabolism Genes and Upregulation of Genes of the Pro-Apoptotic ER-Stress Pathway. International Journal of Environmental Research and Public Health, 17(10), 3746. https://doi.org/10.3390/ijerph17103746 https://doi.org/10.3390/ijerph17103746
  9. Rabé, M., Dumont, S., Álvarez-Arenas, A., Janati, H., Belmonte-Beitia, J., Calvo, G. F., Thibault-Carpentier, C., Séry, Q., Chauvin, C., Joalland, N., Briand, F., Blandin, S., Scotet, E., Pecqueur, C., Clairambault, J., Oliver, L., Perez-Garcia, V., Nadaradjane, A., Cartron, P.-F., … Vallette, F. M. (2020). Identification of a transient state during the acquisition of temozolomide resistance in glioblastoma. Cell Death &Amp\Mathsemicolon Disease, 11(1). https://doi.org/10.1038/s41419-019-2200-2 https://doi.org/10.1038/s41419-019-2200-2

Acknowledged

  1. Bakker, M. K., and Rick A. A. van der Spek, van Rheenen, W., Morel, S., Bourcier, R., Hostettler, I. C., Alg, V. S., van Eijk, K. R., Koido, M., Akiyama, M., Terao, C., Matsuda, K., Walters, R. G., Lin, K., Li, L., Millwood, I. Y., Chen, Z., Rouleau, G. A., Zhou, S., … and. (2020). Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors. Nature Genetics, 52(12), 1303–1313. https://doi.org/10.1038/s41588-020-00725-7 https://doi.org/10.1038/s41588-020-00725-7
  2. Lecomte, E., Saleun, S., Bolteau, M., Guy-Duché, A., Adjali, O., Blouin, V., Penaud-Budloo, M., & Ayuso, E. (2020). The SSV-Seq 2.0 PCR-Free Method Improves the Sequencing of Adeno-Associated Viral Vector Genomes Containing GC-Rich Regions and Homopolymers. Biotechnology Journal, 16(1). https://doi.org/10.1002/biot.202000016 https://doi.org/10.1002/biot.202000016
  3. Alberge, J.-B., Magrangeas, F., Wagner, M., Denié, S., Guérin-Charbonnel, C., Campion, L., Attal, M., Avet-Loiseau, H., Carell, T., Moreau, P., Minvielle, S., & Sérandour, A. A. (2020). DNA hydroxymethylation is associated with disease severity and persists at enhancers of oncogenic regions in multiple myeloma. Clinical Epigenetics, 12(1). https://doi.org/10.1186/s13148-020-00953-y https://doi.org/10.1186/s13148-020-00953-y
  4. Sayed, Z. R. A., Canac, R., Cimarosti, B., Bonnard, C., Gourraud, J.-B., Hamamy, H., Kayserili, H., Girardeau, A., Jouni, M., Jacob, N., Gaignerie, A., Chariau, C., David, L., Forest, V., Marionneau, C., Charpentier, F., Loussouarn, G., Lamirault, G., Reversade, B., … Gaborit, N. (2020). Human model of \lessi\greaterIRX5\less/i\greater mutations reveals key role for this transcription factor in ventricular conduction. Cardiovascular Research, 117(9), 2092–2107. https://doi.org/10.1093/cvr/cvaa259 https://doi.org/10.1093/cvr/cvaa259
  5. Roquilly, A., Jacqueline, C., Davieau, M., Mollé, A., Sadek, A., Fourgeux, C., Rooze, P., Broquet, A., Misme-Aucouturier, B., Chaumette, T., Vourc’h, M., Cinotti, R., Marec, N., Gauttier, V., McWilliam, H. E. G., Altare, F., Poschmann, J., Villadangos, J. A., & Asehnoune, K. (2020). Alveolar macrophages are epigenetically altered after inflammation, leading to long-term lung immunoparalysis. Nature Immunology, 21(6), 636–648. https://doi.org/10.1038/s41590-020-0673-x https://doi.org/10.1038/s41590-020-0673-x
  6. Seiller, C., Maiga, S., Touzeau, C., Bellanger, C., Kervoëlen, C., Descamps, G., Maillet, L., Moreau, P., Pellat-Deceunynck, C., Gomez-Bougie, P., & Amiot, M. (2020). Dual targeting of BCL2 and MCL1 rescues myeloma cells resistant to BCL2 and MCL1 inhibitors associated with the formation of BAX/BAK hetero-complexes. Cell Death &Amp\Mathsemicolon Disease, 11(5). https://doi.org/10.1038/s41419-020-2505-1 https://doi.org/10.1038/s41419-020-2505-1
  7. Frapin, M., Guignard, S., Meistermann, D., Grit, I., Moullé, V. S., Paillé, V., Parnet, P., & Amarger, V. (2020). Maternal Protein Restriction in Rats Alters the Expression of Genes Involved in Mitochondrial Metabolism and Epitranscriptomics in Fetal Hypothalamus. Nutrients, 12(5), 1464. https://doi.org/10.3390/nu12051464 https://doi.org/10.3390/nu12051464
  8. Pierre, A. S., Giemza, J., Alves, I., Karakachoff, M., Gaudin, M., Amouyel, P., Dartigues, J.-F., Tzourio, C., Monteil, M., Galan, P., Hercberg, S., Mathieson, I., Redon, R., Génin, E., & Dina, C. (2020). Correction: The genetic history of France. European Journal of Human Genetics, 28(7), 988–988. https://doi.org/10.1038/s41431-020-0604-1 https://doi.org/10.1038/s41431-020-0604-1
  9. Pham, T. H., Lecomte, S., Guevel, R. L., Lardenois, A., Evrard, B., Chalmel, F., Ferriere, F., Balaguer, P., Efstathiou, T., & Pakdel, F. (2020). Characterization of Glyceollins as Novel Aryl Hydrocarbon Receptor Ligands and Their Role in Cell Migration. International Journal of Molecular Sciences, 21(4), 1368. https://doi.org/10.3390/ijms21041368 https://doi.org/10.3390/ijms21041368
  10. Montassier, E., Al-Ghalith, G. A., Mathé, C., Bastard, Q. L., Douillard, V., Garnier, A., Guimon, R., Raimondeau, B., Touchefeu, Y., Duchalais, E., Vince, N., Limou, S., Gourraud, P.-A., Laplaud, D. A., Nicot, A. B., Soulillou, J.-P., & Berthelot, L. (2020). Distribution of Bacterial \upalpha1,3-Galactosyltransferase Genes in the Human Gut Microbiome. Frontiers in Immunology, 10. https://doi.org/10.3389/fimmu.2019.03000 https://doi.org/10.3389/fimmu.2019.03000

2019

Authored

  1. Belbachir, N., Portero, V., Sayed, Z. R. A., Gourraud, J.-B., Dilasser, F., Jesel, L., Guo, H., Wu, H., Gaborit, N., Guilluy, C., Girardeau, A., Bonnaud, S., Simonet, F., Karakachoff, M., Pattier, S., Scott, C., Burel, S., Marionneau, C., Chariau, C., … Scouarnec, S. L. (2019). \lessi\greaterRRAD\less/i\greater mutation causes electrical and cytoskeletal defects in cardiomyocytes derived from a familial case of Brugada syndrome. European Heart Journal, 40(37), 3081–3094. https://doi.org/10.1093/eurheartj/ehz308 https://doi.org/10.1093/eurheartj/ehz308
  2. Leveque, X., Hochane, M., Geraldo, F., Dumont, S., Gratas, C., Oliver, L., Gaignier, C., Trichet, V., Layrolle, P., Heymann, D., Herault, O., Vallette, F. M., & Olivier, C. (2019). Low-Dose Pesticide Mixture Induces Accelerated Mesenchymal Stem Cell Aging In Vitro. Stem Cells, 37(8), 1083–1094. https://doi.org/10.1002/stem.3014 https://doi.org/10.1002/stem.3014
  3. Thériault, S., Dina, C., Messika-Zeitoun, D., Scouarnec, S. L., Capoulade, R., Gaudreault, N., Rigade, S., Li, Z., Simonet, F., Lamontagne, M., Clavel, M.-A., Arsenault, B. J., Boureau, A.-S., Lecointe, S., Baron, E., Bonnaud, S., Karakachoff, M., Charpentier, E., Fellah, I., … and, J.-J. S. (2019). Genetic association analyses highlight \lessi\greaterIL6\less/i\greater, \lessi\greaterALPL\less/i\greater, and \lessi\greaterNAV1\less/i\greater as three new susceptibility genes underlying calcific aortic valve stenosis. https://doi.org/10.1101/515494 https://doi.org/10.1101/515494

Acknowledged

  1. Bastard, Q. L., Vangay, P., Batard, E., Knights, D., & Montassier, E. (2019). US Immigration Is Associated With Rapid and Persistent Acquisition of Antibiotic Resistance Genes in the Gut. Clinical Infectious Diseases, 71(2), 419–421. https://doi.org/10.1093/cid/ciz1087 https://doi.org/10.1093/cid/ciz1087
  2. Alberge, J.-B., Magrangeas, F., Wagner, M., Denié, S., Guérin-Charbonnel, C., Campion, L., Attal, M., Avet-Loiseau, H., Carell, T., Moreau, P., Minvielle, S., & Sérandour, A. A. (2019). DNA hydroxymethylation reveals transcription regulation networks and prognostic signatures in multiple myeloma. Acknowledged. https://doi.org/10.1101/806133 https://doi.org/10.1101/806133
  3. Leroy, T., Louvet, J.-M., Lalanne, C., Provost, G. L., Labadie, K., Aury, J.-M., Delzon, S., Plomion, C., & Kremer, A. (2019). Adaptive introgression as a driver of local adaptation to climate in European white oaks. New Phytologist, 226(4), 1171–1182. https://doi.org/10.1111/nph.16095 https://doi.org/10.1111/nph.16095
  4. Leroy, T., Rougemont, Q., Dupouey, J.-L., Bodénès, C., Lalanne, C., Belser, C., Labadie, K., Provost, G. L., Aury, J.-M., Kremer, A., & Plomion, C. (2019). Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers. New Phytologist, 226(4), 1183–1197. https://doi.org/10.1111/nph.16039 https://doi.org/10.1111/nph.16039
  5. Guimbretiere, G., Scouarnec, S. L., Rigade, S., Boureau, A. S., Cueff, C., Capoulade, R., Dina, C., Mérot, J., Schott, J. J., & Tourneau, T. L. (2019). Phenotypic and genotypic approach of a large family with early onset tricuspid aortic valve sclerosis-stenosis: A multimodality evaluation. Archives of Cardiovascular Diseases Supplements, 11(1), 66–67. https://doi.org/10.1016/j.acvdsp.2018.10.145 https://doi.org/10.1016/j.acvdsp.2018.10.145